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Entropy estimates of small data sets

Juan A Bonachela et al 2008 J. Phys. A: Math. Theor. 41 202001 (9pp)   doi: 10.1088/1751-8113/41/20/202001  Help

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Juan A Bonachela1,2, Haye Hinrichsen2 and Miguel A Muñoz1
1 Departamento de Electromagnetismo y Física de la Materia and Instituto de Física Teórica y Computacional Carlos I, Facultad de Ciencias, Universidad de Granada, 18071 Granada, Spain
2 Fakultät für Physik und Astronomie, Universität Würzburg, Am Hubland, 97074 Würzburg, Germany

Abstract. Estimating entropies from limited data series is known to be a non-trivial task. Naïve estimations are plagued with both systematic (bias) and statistical errors. Here, we present a new 'balanced estimator' for entropy functionals (Shannon, Rényi and Tsallis) specially devised to provide a compromise between low bias and small statistical errors, for short data series. This new estimator outperforms other currently available ones when the data sets are small and the probabilities of the possible outputs of the random variable are not close to zero. Otherwise, other well-known estimators remain a better choice. The potential range of applicability of this estimator is quite broad specially for biological and digital data series.

PACS numbers: 89.75.Hc, 05.45.Xt, 87.18.Sn

Print publication: Issue 20 (23 May 2008)
Received 21 December 2007, in final form 10 April 2008
Published 29 April 2008

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